nf-core / ampliseqLinks
Amplicon sequencing analysis workflow using DADA2 and QIIME2
☆230Updated last week
Alternatives and similar repositories for ampliseq
Users that are interested in ampliseq are comparing it to the libraries listed below
Sorting:
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Assembly and binning of metagenomes☆265Updated 3 weeks ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆229Updated 3 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆361Updated 4 months ago
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- A user-friendly workflow for phylogenomics☆224Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆167Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆335Updated 8 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆174Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated last week
- Bacterial ribosomal RNA predictor☆266Updated this week
- A tool to circularize genome assemblies☆249Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated 2 months ago
- Classifier for metagenomic sequences☆269Updated 6 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆172Updated this week
- Pan-genome wide association studies☆205Updated last year
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- An overview of all nanopack tools☆273Updated 2 years ago
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- A complete pipeline for metagenomic analysis☆440Updated last week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Updated 2 months ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- TransDecoder source☆301Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- bioBakery tools for meta'omic profiling☆299Updated 6 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆218Updated last month
- Finds SNP sites from a multi-FASTA alignment file☆271Updated 5 years ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago