Alternatives and similar repositories for ampliseq

Users that are interested in ampliseq are comparing it to the libraries listed below

• nf-core / mag
  Assembly and binning of metagenomes
  ☆241Updated last week
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆235Updated 4 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆203Updated 10 months ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆160Updated 2 years ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆214Updated this week
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆213Updated last year
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆155Updated last week
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆325Updated last year
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆117Updated last month
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆216Updated 2 months ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆143Updated this week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆311Updated 3 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆247Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆197Updated last year
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆345Updated last year
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆283Updated last month
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆306Updated 4 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆265Updated 2 weeks ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆171Updated last week
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆139Updated 10 years ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆311Updated 4 months ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated 3 weeks ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆338Updated 3 weeks ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆136Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆141Updated 3 years ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆261Updated 4 years ago
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆270Updated 6 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆144Updated 8 months ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆273Updated last month
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆243Updated last year