Zymo-Research / figaroLinks
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
☆91Updated last year
Alternatives and similar repositories for figaro
Users that are interested in figaro are comparing it to the libraries listed below
Sorting:
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆59Updated last year
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆105Updated 9 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- ☆72Updated 3 weeks ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- ☆84Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- ☆78Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆49Updated last week
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- A toolbox for comparative genomics.☆106Updated 4 years ago
- ☆50Updated 4 years ago
- Bioinformatics Tools☆89Updated last month
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 3 months ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 3 weeks ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago