Zymo-Research / figaro
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
☆87Updated 9 months ago
Alternatives and similar repositories for figaro:
Users that are interested in figaro are comparing it to the libraries listed below
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆155Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆115Updated 11 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆37Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 4 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆75Updated 2 months ago
- Metatranscriptomics Tutorial☆62Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- ☆59Updated 5 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- ☆85Updated 11 months ago
- Making whole bacterial genome sequencing data analysis easy☆106Updated 2 weeks ago
- ☆56Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆204Updated last month
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 8 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆85Updated last year
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- ☆74Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆222Updated last month
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆111Updated 2 weeks ago
- BSR-Based Allele Calling Algorithm☆142Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆117Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- REference Sequence annotation and CuRatIon Pipeline☆98Updated 2 weeks ago
- Generating iToL annotations from Spreadsheet or CSV files☆100Updated 4 years ago