waldronlab / lefserLinks
R implementation of the LEfSe method
☆63Updated last month
Alternatives and similar repositories for lefser
Users that are interested in lefser are comparing it to the libraries listed below
Sorting:
- Transform files to the microtable object with microeco package☆28Updated 2 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- ☆58Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Updated 5 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated 3 months ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- ☆42Updated 8 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- SourceTracker2☆82Updated last year
- ☆79Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- ☆12Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- ☆86Updated last year
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- Orchestrating Microbiome Analysis☆105Updated 3 weeks ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆51Updated last month
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- ☆16Updated 2 years ago