R implementation of the LEfSe method
☆66May 14, 2026Updated last month
Alternatives and similar repositories for lefser
Users that are interested in lefser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- A comprehensive R package for deep mining microbiome☆195Apr 29, 2026Updated 2 months ago
- An R package for downstream data analysis of microbiome omics data☆281Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 2 months ago
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 2 years ago
- ☆89May 22, 2024Updated 2 years ago
- ☆19Nov 11, 2024Updated last year
- ☆15Mar 14, 2023Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆50Jun 6, 2026Updated 3 weeks ago
- Ying's tools for analysis, with particular focus on microbiome data☆40May 20, 2026Updated last month
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 4 months ago
- A healthy human gut genome collection☆26Aug 21, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- A shiny package for microbiome functional enrichment analysis☆42Jun 1, 2026Updated 3 weeks ago
- ☆21Jan 14, 2024Updated 2 years ago
- ☆57Mar 14, 2024Updated 2 years ago
- gutSMASH☆60Oct 3, 2025Updated 8 months ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 3 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆376Aug 1, 2025Updated 10 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆199Jun 5, 2026Updated 3 weeks ago
- Microbial marker identification from cross-cohort datasets☆15May 15, 2024Updated 2 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆391Nov 27, 2025Updated 7 months ago
- bioBakery tools for meta'omic profiling☆319Updated this week
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 9 months ago
- ☆18Oct 13, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Dynamic Multivariate Data Analysis and Visualization Platform☆41Nov 8, 2015Updated 10 years ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 6 years ago
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated last month
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated 2 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 3 months ago