An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
☆21Oct 17, 2023Updated 2 years ago
Alternatives and similar repositories for microDecon
Users that are interested in microDecon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Miscellaneous functions for metagenomic analysis.☆54May 14, 2026Updated last week
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 7 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 10 months ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆18May 6, 2026Updated 2 weeks ago
- ☆23Feb 23, 2023Updated 3 years ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆144Apr 10, 2026Updated last month
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 8 months ago
- ☆10Mar 24, 2025Updated last year
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆24Aug 10, 2025Updated 9 months ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- ☆12Apr 5, 2021Updated 5 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago
- Import qiime2 artifacts to R☆180Dec 12, 2024Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Updated this week
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package for downstream analysis for anacapa eDNA pipeline☆23Dec 10, 2021Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. car — Companion to Applied Regression. Homepage: https://github.com/bprice…☆10Feb 3, 2026Updated 3 months ago
- creating reference databases for amplicon sequencing☆50Jan 13, 2026Updated 4 months ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 3 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jan 15, 2026Updated 4 months ago
- Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes☆69Jun 26, 2022Updated 3 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Pipeline to design taxon-specific primes in defined bacterial communities.☆26Jan 28, 2025Updated last year
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago