colinbrislawn / unite-trainLinks
🍄 Qiime2 ITS classifiers for the UNITE database
☆46Updated 3 months ago
Alternatives and similar repositories for unite-train
Users that are interested in unite-train are comparing it to the libraries listed below
Sorting:
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆49Updated last month
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆16Updated last year
- ☆50Updated 4 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆236Updated 8 months ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- BSR-Based Allele Calling Algorithm☆148Updated last week
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆161Updated 7 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- ☆148Updated last year
- ☆72Updated 3 weeks ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆138Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆144Updated 3 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆51Updated 4 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- A toolbox for comparative genomics.☆106Updated 4 years ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆30Updated 2 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated 2 weeks ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆107Updated 2 years ago
- DAS Tool☆162Updated last year