π Qiime2 ITS classifiers for the UNITE database
β49Apr 6, 2026Updated last week
Alternatives and similar repositories for unite-train
Users that are interested in unite-train are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of Krona to QIIME2β16Mar 14, 2024Updated 2 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysisβ17Mar 26, 2025Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.β13Mar 18, 2024Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 frameworkβ128Jan 8, 2026Updated 3 months ago
- Look Up Guild Information for Fungi in Rβ23Mar 20, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A QIIME 2 implementation of SMURFβ13Apr 27, 2022Updated 3 years ago
- β32May 29, 2024Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemakeβ45Mar 16, 2026Updated last month
- Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2β16Jan 20, 2024Updated 2 years ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.β29May 5, 2025Updated 11 months ago
- 16S pipeline using qiime2 created with snakemakeβ12Apr 9, 2026Updated last week
- Automated pipeline for amplicon sequence analysisβ11Nov 25, 2025Updated 4 months ago
- β13Aug 13, 2024Updated last year
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demoβ¦β39Jul 19, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β54Jun 14, 2025Updated 10 months ago
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. β¦β30Jan 20, 2026Updated 2 months ago
- R package for computing alpha and beta contributional diversity metricsβ11May 5, 2023Updated 2 years ago
- β12Feb 26, 2019Updated 7 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2β243Updated this week
- Automated pipeline for analyses of fungal ITS from the Illuminaβ33May 1, 2025Updated 11 months ago
- R package for microbiome biomarker discoveryβ197Feb 19, 2025Updated last year
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcodβ¦β16Dec 30, 2025Updated 3 months ago
- Microbial co-occurrence network inferred from Earth Microbiome Projectβ27Apr 22, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Scripts written for the "Finding Hidden Messages in DNA (Bioinformatics I)" course offered by UCSanDiego on Coursera.orgβ11Apr 25, 2016Updated 9 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ35Oct 26, 2020Updated 5 years ago
- t-distributed stochastic neighbor embedding for microbiota dataβ12May 12, 2019Updated 6 years ago
- β13Updated this week
- β10Jan 20, 2022Updated 4 years ago
- A python package to query different databases of boldsystems.orgβ32Oct 28, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.β12Oct 30, 2023Updated 2 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Dataβ23Jun 27, 2022Updated 3 years ago
- A Course on designing high-throughput experimentsβ13Sep 25, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the ofβ¦β14Nov 22, 2022Updated 3 years ago
- π π§βπ« Website for graduate-level course on comparative and international public administration, built with Quartoβ10Apr 20, 2023Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic dataβ27Updated this week
- MasterPDFEditor 4 in AppImageβ20Mar 31, 2026Updated 2 weeks ago
- A companion R package for the MicrobiomeAnalyst web serverβ132Apr 10, 2026Updated last week
- mapping files for MetaCyc pathwayβ13Sep 14, 2019Updated 6 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.β23Jun 3, 2025Updated 10 months ago