Alternatives and similar repositories for unite-train

Users that are interested in unite-train are comparing it to the libraries listed below

• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆63Updated 2 years ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆216Updated 3 months ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆160Updated 2 years ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated 3 weeks ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆79Updated last week
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆49Updated 11 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆137Updated last year
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆152Updated 3 months ago
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆81Updated last month
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆195Updated 3 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆233Updated last week
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆155Updated last week
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆96Updated 3 months ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆136Updated last year
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆103Updated 5 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆75Updated 2 years ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆108Updated 2 months ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆89Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆116Updated 3 weeks ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆216Updated 2 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆122Updated last year
• cmks / DAS_Tool
  DAS Tool
  ☆153Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆163Updated 2 months ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆104Updated 4 years ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆131Updated 2 months ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆126Updated 8 months ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆47Updated 3 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆67Updated last year
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆214Updated last week
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆136Updated 3 years ago