colinbrislawn / unite-train
🍄 Qiime2 ITS classifiers for the UNITE database
☆33Updated 2 months ago
Related projects: ⓘ
- Assessing the quality of metagenome-derived genome bins using machine learning☆164Updated 3 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆42Updated last month
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last month
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆59Updated 9 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆45Updated 3 years ago
- Metatranscriptomics Tutorial☆54Updated last year
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆12Updated 2 months ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆76Updated 3 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆62Updated 8 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆78Updated 2 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆94Updated this week
- Using ggtree to build phylogenetic trees☆45Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆79Updated 10 months ago
- ☆44Updated 3 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆38Updated 6 months ago
- Making whole bacterial genome sequencing data analysis easy☆98Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆101Updated 5 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆68Updated last year
- ☆31Updated 2 weeks ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆114Updated 8 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆105Updated 10 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆78Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆93Updated 2 weeks ago
- ☆65Updated 8 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆116Updated 3 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆45Updated 7 months ago
- ☆59Updated 4 years ago