🍄 Qiime2 ITS classifiers for the UNITE database
☆55Oct 26, 2026Updated last week
Alternatives and similar repositories for unite-train
Users that are interested in unite-train are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated 2 years ago
- A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio☆15Updated this week
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆20Aug 17, 2026Updated 2 months ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆44Jul 19, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for the Nanopore 16S and ITS long read clustering and taxonomy classification☆23Oct 20, 2026Updated 2 weeks ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2☆18Jan 20, 2024Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆103Updated this week
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated 5 months ago
- Look Up Guild Information for Fungi in R☆26Aug 14, 2026Updated 2 months ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆70Oct 3, 2026Updated last month
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- A QIIME 2 implementation of SMURF☆14Apr 27, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- FUNGuild: parsing OTUs into functional guilds☆136Apr 26, 2024Updated 2 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆97Jul 23, 2026Updated 3 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆52Jun 6, 2026Updated 5 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆265Updated this week
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated 2 years ago
- C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data☆11Aug 1, 2026Updated 3 months ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Nov 13, 2019Updated 6 years ago
- Fast expectation maximization for microbial source tracking☆152May 9, 2024Updated 2 years ago
- Reproducible hybrid metagenomics with MAG recovery and strain-level resolution☆11Aug 20, 2026Updated 2 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆48Updated this week
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆33Jan 20, 2026Updated 9 months ago
- ☆15Oct 14, 2023Updated 3 years ago
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- A python package to query different databases of boldsystems.org☆33Oct 28, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Metagenomic Estimation of Dietary Intake and Content.☆48Aug 5, 2026Updated 3 months ago
- ☆19Jul 7, 2026Updated 4 months ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆18Jun 30, 2026Updated 4 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆34May 1, 2025Updated last year
- Using R language in microbiome analysis☆363May 10, 2023Updated 3 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year