interactivereport / cellxgene_VIPLinks
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
☆157Updated last week
Alternatives and similar repositories for cellxgene_VIP
Users that are interested in cellxgene_VIP are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆150Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated this week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 4 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆142Updated last month
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆92Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆167Updated 5 months ago
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- software to detect doublets☆94Updated 8 months ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- trajectory inference☆104Updated 7 months ago
- A docker image for single-cell analysis☆89Updated 7 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆205Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Tools for single-cell data processing☆126Updated last year
- Conversion between scRNA-seq objects☆184Updated 2 weeks ago
- Multiome GRN inference.☆127Updated last year
- Convert between AnnData and SingleCellExperiment☆138Updated last week
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆146Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year