Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
☆165Jun 23, 2026Updated 4 months ago
Alternatives and similar repositories for cellxgene_VIP
Users that are interested in cellxgene_VIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 3 years ago
- Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.☆43Updated this week
- ☆18Updated this week
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆11Mar 2, 2022Updated 4 years ago
- OmicsView: omics data analysis through interactive visual analytics☆15Apr 13, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Mar 13, 2024Updated 2 years ago
- scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).☆28Feb 4, 2026Updated 8 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆70Dec 3, 2025Updated 10 months ago
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- Hosted version of cellxgene☆21Updated this week
- An interactive explorer for single-cell transcriptomics data☆788Sep 29, 2026Updated last month
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆40Feb 6, 2026Updated 8 months ago
- A Shiny web app for mapping datasets using Seurat v4☆151May 22, 2026Updated 5 months ago
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Memory-efficient analysis of single-cell data.☆125Oct 21, 2026Updated last week
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration. https://doi.org/10.1101/2025.03.17.643771☆16Apr 25, 2025Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- A scanpy extension to analyse single-cell TCR and BCR data.☆268Updated this week
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 8 months ago
- data and model repository for single-cell data☆135Dec 21, 2023Updated 2 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆427Sep 12, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10Feb 12, 2019Updated 7 years ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- scDataviz: single cell dataviz and downstream analyses☆68Sep 24, 2021Updated 5 years ago
- Viscello for Visualization of Single Cell Data☆27Oct 5, 2024Updated 2 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Jun 10, 2026Updated 4 months ago
- Interactively analyze single cell genomic data☆190Oct 9, 2026Updated 2 weeks ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 6 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆186Jun 10, 2024Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆153Dec 5, 2024Updated last year
- Shiny Interactive Web Apps for Single-Cell Data☆219Apr 24, 2025Updated last year
- Interpretation of cell states using reference single-cell maps☆329Dec 19, 2025Updated 10 months ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year