interactivereport / CellMapLinks
☆15Updated last year
Alternatives and similar repositories for CellMap
Users that are interested in CellMap are comparing it to the libraries listed below
Sorting:
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆11Updated 3 years ago
- OmicsView: omics data analysis through interactive visual analytics☆16Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆19Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- .h5mu files interface for Seurat☆32Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last month
- cell type specific, trait-associated gene regulation☆27Updated 3 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆19Updated last year
- ☆29Updated 2 years ago
- ☆39Updated 9 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆17Updated 11 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- ☆13Updated last year
- ☆41Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆8Updated 3 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆19Updated last month
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago