theislab / sfaira
data and model repository for single-cell data
☆136Updated last year
Alternatives and similar repositories for sfaira:
Users that are interested in sfaira are comparing it to the libraries listed below
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- R package to access DoRothEA's regulons☆145Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- Conversion between scRNA-seq objects☆173Updated 3 weeks ago
- software to detect doublets☆92Updated 4 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Convert between AnnData and SingleCellExperiment☆132Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 2 years ago
- Multiome GRN inference.☆121Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆121Updated 3 weeks ago
- trajectory inference☆98Updated 3 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆200Updated 2 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆139Updated last year
- Detect doublets in single-cell RNA-seq data☆149Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆191Updated last month
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 10 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- Efficient genotyping bi-allelic SNPs on single cells☆143Updated 10 months ago
- Multi-omic velocity inference☆110Updated 6 months ago
- Batch balanced KNN☆160Updated last year
- ☆128Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆197Updated 2 months ago
- Python package to perform enrichment analysis from omics data.☆193Updated last week
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago