theislab / sfairaLinks
data and model repository for single-cell data
☆135Updated last year
Alternatives and similar repositories for sfaira
Users that are interested in sfaira are comparing it to the libraries listed below
Sorting:
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Single-Cell Clustering Assessment Framework☆101Updated last year
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- Conversion between scRNA-seq objects☆176Updated last week
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Convert between AnnData and SingleCellExperiment☆136Updated last week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 6 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆150Updated last month
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated 2 months ago
- Scanpy use cases.☆85Updated 4 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆162Updated 3 weeks ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆162Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆71Updated 4 months ago
- R package to access DoRothEA's regulons☆149Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- Multiome GRN inference.☆124Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆202Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆112Updated 7 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- software to detect doublets☆92Updated 5 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆116Updated this week
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- ☆130Updated last year
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- Efficient genotyping bi-allelic SNPs on single cells☆144Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated 11 months ago