Novartis / cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
☆56Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for cellxgene-gateway
- Single-Cell Clustering Assessment Framework☆93Updated last year
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- ☆48Updated 10 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆134Updated 5 months ago
- Code and documentation for the curation of cellxgene datasets☆38Updated this week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 4 months ago
- Scanpy use cases.☆77Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆98Updated 3 weeks ago
- Convert between AnnData and SingleCellExperiment☆129Updated this week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- software to detect doublets☆85Updated 3 months ago
- ☆66Updated 7 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆50Updated 3 months ago
- pseudobulking on an AnnData object☆27Updated last year
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆49Updated this week
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 8 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Clonotype Neighbor Graph Analysis☆81Updated 2 months ago
- ☆67Updated 6 years ago
- CZ CELLxGENE Discover Census☆86Updated this week
- ☆55Updated 6 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆75Updated 5 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆109Updated this week
- A docker image for single-cell analysis☆67Updated 5 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆69Updated 11 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago