Alternatives and similar repositories for cellxgene-gateway

Users that are interested in cellxgene-gateway are comparing it to the libraries listed below

• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆156Updated last week
• lilab-bcb / harmony-pytorch
  ☆55Updated 2 months ago
• calico / solo
  software to detect doublets
  ☆92Updated 7 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆105Updated last week
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆101Updated 3 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆149Updated last year
• scverse / scanpy_usage
  Scanpy use cases.
  ☆86Updated 4 years ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 5 months ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆90Updated this week
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆137Updated this week
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆105Updated last year
• theislab / sfaira
  data and model repository for single-cell data
  ☆135Updated last year
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆65Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 9 months ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆88Updated 6 months ago
• AllonKleinLab / SPRING_dev
  ☆69Updated last year
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆117Updated this week
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆90Updated last year
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆92Updated 6 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆121Updated 3 weeks ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆33Updated 4 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 2 years ago
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆113Updated 9 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆63Updated last week
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆145Updated 8 months ago
• YosefLab / popV
  ☆81Updated this week
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 2 months ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 3 months ago