Alternatives and similar repositories for RNASequest:

Users that are interested in RNASequest are comparing it to the libraries listed below

• interactivereport / bioInfograph
  bioInfograph: an online tool to design and display multi-panel scientific figure interactively
  ☆11Updated 3 years ago
• interactivereport / OmicsView
  OmicsView: omics data analysis through interactive visual analytics
  ☆16Updated 2 years ago
• interactivereport / CellDepot
  CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…
  ☆24Updated last year
• interactivereport / CellMap
  ☆14Updated last year
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆40Updated 4 months ago
• getzlab / CPTAC_PanCan_PTM_2023
  ☆16Updated last year
• aertslab / scenicplus_analyses
  SCENIC+ analyses
  ☆12Updated last year
• quadbio / RNAseq_tutorial
  ☆24Updated 5 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• XSLiuLab / TCfinder
  ☆9Updated 6 months ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆29Updated last week
• weililab / scMAGeCK
  The R Bioconductor package for scMAGeCK.
  ☆12Updated 11 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 2 months ago
• UPSUTER / GEMLI
  ☆30Updated 2 months ago
• PoolLab / generecovery
  ☆29Updated last year
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated last month
• gxiaolab / scAllele
  ☆33Updated 11 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆21Updated 3 weeks ago
• wenweixiong / MARVEL
  ☆46Updated 7 months ago
• EskelandLab / ShinyArchRUiO
  ☆18Updated last year
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆24Updated 9 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 5 months ago
• edroaldo / fusca
  Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …
  ☆19Updated 2 years ago
• lkmklsmn / MitoTrace
  ☆15Updated 9 months ago