interactivereport / scRNAsequestLinks
scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).
☆26Updated 6 months ago
Alternatives and similar repositories for scRNAsequest
Users that are interested in scRNAsequest are comparing it to the libraries listed below
Sorting:
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆36Updated 8 months ago
- ☆29Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- ☆56Updated 5 years ago
- ☆45Updated 2 months ago
- ☆15Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated this week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 4 months ago
- Using BCR and expression for sequence embedding☆25Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆62Updated 4 years ago
- RNA velocity validation☆22Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated last month
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated this week
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- ☆44Updated last year
- ☆57Updated 2 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆96Updated 8 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆39Updated 2 months ago
- Workflow for single-cell RNA-seq analysis using Seurat☆47Updated 2 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Updated 2 years ago