interactivereport / scRNAsequestLinks
scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).
☆26Updated 2 months ago
Alternatives and similar repositories for scRNAsequest
Users that are interested in scRNAsequest are comparing it to the libraries listed below
Sorting:
- ☆15Updated 2 years ago
- ☆45Updated 2 months ago
- Multi-modal single cell analysis pipelines☆58Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.☆19Updated last month
- ☆56Updated last year
- Pan-Cancer Single Cell Classifier☆77Updated last year
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆40Updated 3 weeks ago
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆17Updated 3 years ago
- RNA velocity validation☆22Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated this week
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆53Updated 11 months ago
- ☆29Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 6 months ago
- ☆55Updated 4 years ago
- Unified access to several second-generation deconvolution methods☆73Updated last month
- ☆62Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Easy and comprehensive biological network reconstruction and analysis☆31Updated 11 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated this week
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- A single-cell RNA-seq pipeline☆23Updated 2 years ago