Alternatives and similar repositories for Quickomics

Users that are interested in Quickomics are comparing it to the libraries listed below

• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 4 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated last week
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• dbdimitrov / BingleSeq
  BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
  ☆22Updated 4 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆47Updated last year
• cellatlas / human
  ☆44Updated 8 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆18Updated 3 months ago
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆19Updated last year
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• interactivereport / CellDepot
  CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…
  ☆24Updated 2 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆32Updated 3 years ago
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆43Updated 2 months ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated last month
• jtleek / svaseq
  Analysis for svaseq paper
  ☆19Updated 10 years ago
• greenelab / RNAseq_titration_results
  Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
  ☆37Updated 2 years ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆27Updated 7 months ago
• hms-dbmi / dseqr
  single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
  ☆20Updated 8 months ago
• bzhanglab / WebGestaltR
  R package for WebGestalt
  ☆37Updated 2 months ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated last year
• liuhong-jia / scAnno
  ☆24Updated last month
• wwylab / DeMixT
  ☆36Updated last year