GregorySchwartz / tooManyCellsR
An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
☆25Updated 5 years ago
Alternatives and similar repositories for tooManyCellsR:
Users that are interested in tooManyCellsR are comparing it to the libraries listed below
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆29Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆38Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- An r package that works as a wrapper to homologene☆43Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆16Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆21Updated 4 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year