GregorySchwartz / tooManyCellsRLinks
An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
☆26Updated 5 years ago
Alternatives and similar repositories for tooManyCellsR
Users that are interested in tooManyCellsR are comparing it to the libraries listed below
Sorting:
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆41Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- An R package for visualising cell-cell interactions☆44Updated 11 months ago
- ☆29Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- R package for Bioconductor submission☆35Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- Single-cell Case Control Analysis☆51Updated 8 months ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated this week
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆55Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆25Updated 4 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago