Alternatives and similar repositories for bioInfograph

Users that are interested in bioInfograph are comparing it to the libraries listed below

• interactivereport / OmicsView
  OmicsView: omics data analysis through interactive visual analytics
  ☆16Updated 3 years ago
• interactivereport / CellMap
  ☆15Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 11 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• PoolLab / generecovery
  ☆29Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• drewvoigt10 / cellcuratoR
  sharing interactive single cell gene expression visualizations from Seurat
  ☆10Updated 2 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆23Updated 2 weeks ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆31Updated 2 years ago
• broadinstitute / celligner
  tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.
  ☆11Updated last year
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 2 months ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated last year
• satijalab / Mixscale
  ☆20Updated 5 months ago
• xushiabbvie / TDtool
  ☆11Updated 11 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆45Updated 3 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆37Updated 2 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆33Updated last month
• satijalab / azimuth-references
  ☆24Updated 4 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆21Updated 3 years ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 3 months ago
• Novartis / granulator
  ☆14Updated 4 years ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆21Updated 4 years ago