Perl scripts for working with the GFF format
☆16Aug 24, 2011Updated 14 years ago
Alternatives and similar repositories for gfftools
Users that are interested in gfftools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- stageR package☆13May 8, 2026Updated last month
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Apr 22, 2021Updated 5 years ago
- Introduction to Python Programming☆11Mar 31, 2020Updated 6 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.☆13May 13, 2022Updated 4 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 2 months ago
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆23Sep 13, 2023Updated 2 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- ☆31Jun 2, 2026Updated last week
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 2 months ago
- ☆16May 7, 2023Updated 3 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆18Apr 3, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Apr 21, 2026Updated last month
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 8 years ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- SRAToolkit has been REPLACED - see README☆39Aug 29, 2016Updated 9 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆89Jun 19, 2018Updated 7 years ago
- convert various features into a GFF-like file for use in genome browsers☆73May 28, 2026Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Sep 16, 2021Updated 4 years ago
- An imagemagick-like frontend to Biopython SeqIO☆118Mar 18, 2024Updated 2 years ago
- Quality Control of Next Generation Sequencing Data☆21Jun 16, 2025Updated 11 months ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- AI Journey 2019: Combined Solution☆15Dec 8, 2022Updated 3 years ago
- UI for RipGrep☆23Apr 11, 2026Updated last month
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated last month
- Workshop • Intro to Bioinformatics using NGS data • 5 days☆17Mar 16, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 8 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/prank-msa☆37Mar 19, 2026Updated 2 months ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago