deweylab / detonate
DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
☆11Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for detonate
- Improved Phased Assembler☆28Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- Adapters for trimming☆30Updated 5 years ago
- Rank-based Gene Ontology analysis of gene expression data☆39Updated last year
- toolkit to process gtf files☆16Updated 2 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- genomic alignment similarity search tool☆19Updated 5 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- ☆26Updated 3 years ago
- ☆28Updated last year
- Merge transcriptome assemblies☆30Updated 8 years ago
- transposable element typing pipeline☆16Updated 8 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆25Updated 7 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- Python package and routines for merging VCF files☆29Updated 3 years ago