deweylab / detonateLinks
DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
☆13Updated 9 years ago
Alternatives and similar repositories for detonate
Users that are interested in detonate are comparing it to the libraries listed below
Sorting:
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated this week
- ☆28Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated this week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- ☆26Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29Updated 4 months ago
- ☆41Updated last year
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- ☆29Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆21Updated 2 weeks ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago