statOmics / stageRLinks
stageR package
☆13Updated 2 years ago
Alternatives and similar repositories for stageR
Users that are interested in stageR are comparing it to the libraries listed below
Sorting:
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆14Updated 5 months ago
- Bedfile perturbation tool☆17Updated 4 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- ☆22Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- ☆16Updated this week
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 7 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 7 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 6 years ago
- Chromatin segmentation in R☆19Updated 8 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 4 months ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- ☆26Updated 5 years ago
- ☆14Updated 2 years ago