stageR package
☆13Feb 28, 2023Updated 3 years ago
Alternatives and similar repositories for stageR
Users that are interested in stageR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated last year
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A file watcher written in Rust☆11Dec 1, 2024Updated last year
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 8 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 5 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated 10 months ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Dec 20, 2010Updated 15 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Mar 18, 2026Updated 3 weeks ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- More robust R programming, testing and debugging☆16Feb 26, 2016Updated 10 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- CRC Subtyping Consortium☆13Jun 1, 2018Updated 7 years ago
- Augmented Interval Tree implemented in Cython/C☆20Jan 17, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- open source high throughput homogeneous liquid handler ( automated pipette )☆17Sep 20, 2011Updated 14 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- (Clojure-like) Lazy iterators in Python☆24Jul 21, 2025Updated 8 months ago
- ☆15Mar 13, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Jan 14, 2026Updated 2 months ago
- Ultraperformant reimplementation of SICER☆59Dec 1, 2025Updated 4 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- Advanced R / Bioconductor training material☆20Mar 15, 2023Updated 3 years ago