tanghaibao / bio-pipelineLinks
My collection of light bioinformatics analysis pipelines for specific tasks
☆78Updated last year
Alternatives and similar repositories for bio-pipeline
Users that are interested in bio-pipeline are comparing it to the libraries listed below
Sorting:
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- my bin directory☆45Updated 4 months ago
- PHAST☆78Updated this week
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- parallelized blat with multi-threads support☆55Updated 11 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated 2 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆34Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated last week
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Transcripts annotation and GO enrichment Fisher tests☆27Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Specifications for PacBio® native file formats☆31Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- python plotly Circos from VCF☆40Updated last year