rnajena / poseidonLinks
PoSeiDon: positive selection detection and recombination analysis pipeline
☆38Updated 4 months ago
Alternatives and similar repositories for poseidon
Users that are interested in poseidon are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆32Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆35Updated this week
- ☆27Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago
- Genome-Genome circle synteny☆25Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 4 months ago
- ☆26Updated 4 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- HyPhy standalone analyses☆45Updated 3 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago