Clann: Investigation of phylogenomic signal using supertrees
☆18Jul 25, 2026Updated 3 months ago
Alternatives and similar repositories for clann
Users that are interested in clann are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 5 years ago
- ☆16Jun 26, 2013Updated 13 years ago
- use paired-end transcriptome reads to scaffold genomes☆12May 30, 2019Updated 7 years ago
- ☆21Oct 21, 2024Updated 2 years ago
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Updated this week
- Helper Perl scripts and tree files associated with the EukProt database of genome-scale eukaryotic protein sequence data sets.☆14Nov 30, 2023Updated 2 years ago
- Reciprocal Smallest Distance (RSD) is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolution…☆13Nov 22, 2014Updated 11 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 11 months ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆13Oct 2, 2024Updated 2 years ago
- ☆16Apr 11, 2026Updated 6 months ago
- Feature-aware Directed OrtholoG search☆14Sep 16, 2026Updated last month
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆25Apr 30, 2026Updated 6 months ago
- Fast, accurate species tree estimation.☆13Aug 17, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆44Jul 23, 2025Updated last year
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆21Apr 17, 2019Updated 7 years ago
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 7 years ago
- pyGCluster, a novel hierarchical clustering approach☆12Jul 6, 2023Updated 3 years ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆14Feb 24, 2025Updated last year
- ☆11Oct 23, 2024Updated 2 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sorting and subsampling phylogenomic datasets☆35Apr 9, 2025Updated last year
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- TGAC's Genome Browser☆11Oct 22, 2025Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Oct 22, 2026Updated last week
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- Calculate distances between phylogenetic trees in R☆40Oct 23, 2026Updated last week
- A compositional bias testing and pruning tool for multiple sequence alignments☆13Jun 16, 2026Updated 4 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20Feb 13, 2016Updated 10 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Aug 16, 2026Updated 2 months ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Oct 22, 2026Updated last week
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆14Feb 19, 2020Updated 6 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago