ChrisCreevey / clannView external linksLinks
Clann: constructing consensus trees and supertrees from multiple source trees
☆18Mar 23, 2025Updated 10 months ago
Alternatives and similar repositories for clann
Users that are interested in clann are comparing it to the libraries listed below
Sorting:
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- ☆17Oct 21, 2024Updated last year
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆24Mar 7, 2025Updated 11 months ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆35Feb 6, 2026Updated last week
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 2 months ago
- ☆11Sep 16, 2021Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 6 months ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 3 months ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated 11 months ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 5 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Mar 26, 2024Updated last year
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆14Nov 21, 2024Updated last year
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Feature-aware Directed OrtholoG search☆14Dec 17, 2025Updated last month
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- Parse Copy Number Variation from Array and Sequencing☆17Dec 1, 2023Updated 2 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 3 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- STAG: Species Tree from All Genes☆35Dec 10, 2018Updated 7 years ago
- Calculate distances between phylogenetic trees in R☆35Updated this week
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- ☆20Feb 13, 2016Updated 10 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- ☆16Feb 20, 2024Updated last year
- ☆41Jun 8, 2023Updated 2 years ago
- HyPhy: Hypothesis testing using Phylogenies☆250Updated this week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 4 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 5, 2026Updated last week
- Maximum a posteriori estimate of contamination for ancient samples☆23Nov 4, 2025Updated 3 months ago