ChrisCreevey / clann
Clann: constructing consensus trees and supertrees from multiple source trees
☆14Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for clann
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆14Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆17Updated 4 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated last year
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- Find Unique genomic Regions☆29Updated this week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 11 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 6 years ago
- A tool to root phylogenies☆19Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Manipulate and generate figures for trees in Newick format☆19Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 5 months ago
- Nail is an Alignment Inference tooL☆41Updated this week
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 2 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆29Updated 3 months ago
- ☆23Updated 5 years ago
- ☆16Updated 3 weeks ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆20Updated 8 months ago
- MIRA sequence assembler☆27Updated 5 years ago
- ☆26Updated 3 years ago