Clann: Investigation of phylogenomic signal using supertrees
☆18Apr 21, 2026Updated last month
Alternatives and similar repositories for clann
Users that are interested in clann are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆24Apr 30, 2026Updated 3 weeks ago
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆39Jul 23, 2025Updated 10 months ago
- ☆17Oct 21, 2024Updated last year
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Sep 16, 2021Updated 4 years ago
- ☆16Apr 11, 2026Updated last month
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 6 months ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Feature-aware Directed OrtholoG search☆14Mar 24, 2026Updated 2 months ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated last year
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆28Oct 14, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- ☆20Feb 13, 2016Updated 10 years ago
- Calculate distances between phylogenetic trees in R☆36Updated this week
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Apr 15, 2026Updated last month
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 7 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 6 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 6 months ago
- A Rust-based library for phylogenetic analysis and manipulation☆20May 13, 2026Updated last week
- HyPhy: Hypothesis testing using Phylogenies☆261Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 3 months ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jan 15, 2026Updated 4 months ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- ☆41Jun 8, 2023Updated 2 years ago
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 8 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆39Jan 3, 2026Updated 4 months ago