cboursnell / crb-blastLinks
Conditional Reciprocal Best Blast
☆43Updated 8 years ago
Alternatives and similar repositories for crb-blast
Users that are interested in crb-blast are comparing it to the libraries listed below
Sorting:
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- finshingTool☆54Updated 9 years ago
- Genome Annotation Without Nightmares☆46Updated last week
- ☆35Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Synteny Imager☆65Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- ☆45Updated 9 years ago
- Visualize whole genome alignments as linear maps☆74Updated 3 weeks ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆27Updated 11 months ago
- orthology assignment using phylogenetic and network analyses☆53Updated 3 weeks ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- De novo annotation of young retrotransposons☆47Updated 3 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated 2 years ago
- k-mer learning materials☆83Updated 11 months ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago