Alternatives and similar repositories for gtftools:

Users that are interested in gtftools are comparing it to the libraries listed below

• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆11Updated 3 months ago
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• yukaiquan / biotools
  I often use some of the self-written programs.
  ☆15Updated 9 months ago
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 7 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• frankgenome / DataColor
  DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping
  ☆15Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last month
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆14Updated 6 months ago
• xinkaitong / 1k-pig-genomes
  Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences
  ☆12Updated last year
• xia-lab / Seq2Fun
  ☆16Updated 9 months ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆16Updated 3 years ago
• hanlinqian / IntegrativeNetworkMap
  ☆22Updated 2 years ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 2 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• malonge / CallSV
  A long-read SV calling pipeline
  ☆11Updated 3 years ago
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆15Updated 3 years ago
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 6 years ago
• xuechantian / Plant-LncRNA-pipline
  ☆11Updated 6 months ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 5 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆9Updated last year
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 2 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 9 months ago
• liusy-jz / MODAS
  MODAS: Multi-Omics Data Association Study toolkit
  ☆21Updated last month
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• xunchen85 / ERVcaller
  ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…
  ☆13Updated last year
• iaaaka / evo-devo
  ☆11Updated 3 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 2 years ago
• bjfupoplar / PlantPseudo
  ☆11Updated 5 years ago
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year