Alternatives and similar repositories for gtftools

Users that are interested in gtftools are comparing it to the libraries listed below

• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated 10 months ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆11Updated last year
• frankgenome / DataColor
  DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping
  ☆15Updated last year
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• gagneurlab / splicemap
  ☆20Updated 7 months ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 3 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 7 years ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆13Updated 10 months ago
• xunchen85 / ERVcaller
  ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…
  ☆13Updated last year
• lh3 / treebest
  TreeBeST: Tree Building guided by Species Tree
  ☆14Updated 14 years ago
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆23Updated 6 months ago
• xia-lab / Seq2Fun
  ☆16Updated last year
• a2iEditing / deNovo-Detect
  ☆12Updated 2 years ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 3 years ago
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 7 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• mortazavilab / cerberus
  ☆19Updated 10 months ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated 2 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆19Updated 6 years ago
• jeanlain / HTvertebrates
  scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species
  ☆10Updated 4 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 5 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• jkimlab / msPIPE
  ☆17Updated last year