sanger-pathogens / Bio-TradisLinks
A set of tools to analyse the output from TraDIS analyses
☆24Updated last year
Alternatives and similar repositories for Bio-Tradis
Users that are interested in Bio-Tradis are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆61Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 11 months ago
- An R package designed for drawing gene arrow maps☆79Updated last week
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- IS mapping software☆54Updated 3 years ago
- ☆23Updated 6 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago