sanger-pathogens / Bio-TradisLinks
A set of tools to analyse the output from TraDIS analyses
☆24Updated 2 years ago
Alternatives and similar repositories for Bio-Tradis
Users that are interested in Bio-Tradis are comparing it to the libraries listed below
Sorting:
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago
- ☆35Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- ☆31Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated last year
- A reference viral database (RVDB)☆26Updated 6 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 6 months ago
- ☆41Updated 4 years ago
- StrainFinder☆28Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 7 months ago
- gutSMASH☆55Updated 7 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆44Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago