SRAToolkit has been REPLACED - see README
☆38Aug 29, 2016Updated 10 years ago
Alternatives and similar repositories for sratoolkit
Users that are interested in sratoolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NGS Language Bindings☆123Dec 6, 2023Updated 2 years ago
- ncbi-vdb☆105Updated this week
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- ☆114Apr 23, 2026Updated 6 months ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Little sequence file utilities meant to work within Unix pipelines☆36Jan 20, 2015Updated 11 years ago
- SRA Tools☆1,373Updated this week
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- ☆36Apr 17, 2025Updated last year
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Foreign Contamination Screening - GX source code☆31Jun 9, 2025Updated last year
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 10 years ago
- Cutadapt removes adapter sequences from sequencing reads☆590Sep 21, 2026Updated last month
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- A NGS data analysis pipeline with emphasis on SNP detection☆11Nov 22, 2016Updated 9 years ago
- ☆15Updated this week
- a rust library for high throughput binary encoding of genomic sequences☆12Updated this week
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated last year
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- bíogo ncbi utilities repository☆21Jun 27, 2021Updated 5 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 15 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 10 years ago
- HGVS Nomenclature website☆13Oct 14, 2026Updated 2 weeks ago
- Counting k-mers in massive datasets☆13Nov 22, 2016Updated 9 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 4 years ago
- Maximum likelihood demultiplexing☆54Aug 6, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 10 years ago
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- SplitsTree4 phylogenetic network tool☆12Sep 21, 2023Updated 3 years ago
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- Homepage☆10Aug 7, 2026Updated 2 months ago
- C++ API & command-line toolkit for working with BAM data☆432May 18, 2025Updated last year
- EntrezAJAX - Direct Web Browser Access to the Entrez Programming Utilities☆11Feb 18, 2011Updated 15 years ago