ncbi / sratoolkit
SRAToolkit has been REPLACED - see README
☆38Updated 8 years ago
Alternatives and similar repositories for sratoolkit
Users that are interested in sratoolkit are comparing it to the libraries listed below
Sorting:
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 4 years ago
- A fork of exonerate: a generic tool for sequence alignment☆66Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆40Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- SV caller for nanopore data☆91Updated 4 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated 6 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 6 months ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago