ncbi / sratoolkitLinks
SRAToolkit has been REPLACED - see README
☆38Updated 8 years ago
Alternatives and similar repositories for sratoolkit
Users that are interested in sratoolkit are comparing it to the libraries listed below
Sorting:
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 5 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆105Updated last week
- A fork of exonerate: a generic tool for sequence alignment☆68Updated last year
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- flexible barcode and adapter removal☆80Updated 2 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated 8 months ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆54Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 3 months ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- k-mer counting software☆39Updated 3 years ago
- Implementation of the multiple sequential markovian coalescent☆89Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 8 months ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago