Joseph7e / MAKER-genome-annotations-tutorialLinks
Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
☆22Updated 2 years ago
Alternatives and similar repositories for MAKER-genome-annotations-tutorial
Users that are interested in MAKER-genome-annotations-tutorial are comparing it to the libraries listed below
Sorting:
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Genome Annotation Pipeline☆41Updated last year
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 3 years ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 weeks ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆53Updated 5 months ago
- ☆21Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- ☆41Updated 2 years ago
- ☆18Updated 3 years ago
- ☆45Updated 3 years ago
- ☆44Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆40Updated 7 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆35Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- ☆32Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Genome annotation pipeline☆65Updated last year
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Updated 2 years ago
- ☆44Updated 6 months ago