Joseph7e / MAKER-genome-annotations-tutorialLinks
Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
☆21Updated last year
Alternatives and similar repositories for MAKER-genome-annotations-tutorial
Users that are interested in MAKER-genome-annotations-tutorial are comparing it to the libraries listed below
Sorting:
- Genome Annotation Pipeline☆35Updated 9 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆34Updated this week
- Analyses pipelines that I use for my work☆12Updated 3 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆30Updated 5 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆29Updated last year
- This is the standalone version of the EviAnn pipeline☆91Updated this week
- paml documentation and tutorials☆56Updated 2 weeks ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- An efficient assembly tool for plant mitochondrial genome☆62Updated last year
- Neural network classification of TE☆87Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- NLR-Annotator upload☆66Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- ☆40Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆40Updated 8 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- ☆40Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆20Updated 8 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆42Updated 3 weeks ago
- ☆31Updated 9 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 8 months ago
- A novel genome assembly pipeline based on deep learning☆62Updated 6 months ago
- ☆44Updated 8 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆24Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆36Updated last week