Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
☆23Sep 13, 2023Updated 3 years ago
Alternatives and similar repositories for MAKER-genome-annotations-tutorial
Users that are interested in MAKER-genome-annotations-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome Annotation Pipeline☆47Aug 20, 2024Updated 2 years ago
- GWAS analysis process based on EMMAX software☆22Dec 12, 2023Updated 2 years ago
- ☆31Apr 16, 2023Updated 3 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆15Feb 23, 2023Updated 3 years ago
- Bacterial Genome Assembly and Assessment☆29Apr 28, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NCBI download and Orthofinder analysis☆14Jun 17, 2022Updated 4 years ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated last year
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- ☆12Sep 28, 2021Updated 5 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆30Oct 16, 2025Updated last year
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 4 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Updated this week
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- Serial of Similarity Matrix for subgenome partition☆11Feb 6, 2025Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Jan 22, 2025Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- ☆60Jun 12, 2025Updated last year
- Fast manhattenplots using ggplot2☆14Apr 24, 2026Updated 6 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- Scripts and how-tos for comparative genomics work.☆10Apr 25, 2023Updated 3 years ago
- A chromosome-level polyploid phasing scaffolding tool☆29Oct 19, 2026Updated 2 weeks ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆27Feb 23, 2026Updated 8 months ago
- A bioinformatics toolset for multiomic analysis☆22Aug 17, 2026Updated 2 months ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆18Mar 14, 2022Updated 4 years ago
- Best practices and workflow for genome annotation☆80Apr 14, 2025Updated last year
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 16, 2026Updated 2 weeks ago
- Repository☆10Oct 23, 2024Updated 2 years ago
- A eukaryotic genome annotation pipeline☆14Oct 20, 2026Updated last week
- RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.☆15Oct 6, 2026Updated 3 weeks ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆175Sep 15, 2026Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year