mscampbell / Genome_annotation
These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to follw
☆15Updated 7 years ago
Alternatives and similar repositories for Genome_annotation:
Users that are interested in Genome_annotation are comparing it to the libraries listed below
- ☆32Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- A box of genomics tools☆21Updated 4 years ago
- ☆11Updated 2 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- read and analyse RepeatMasker output☆24Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 8 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated 2 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- ☆24Updated this week
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- ☆21Updated 5 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Dinoflagellate Annotation Workflow☆13Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 10 months ago