phylogenetic analyses informed by deep mutational scanning data
☆15Apr 5, 2026Updated 2 months ago
Alternatives and similar repositories for phydms
Users that are interested in phydms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 3 months ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Browser-based Interactive Phylogeographic Animations☆20Aug 29, 2017Updated 8 years ago
- software for the analysis and visualization of deep mutational scanning data☆35Oct 6, 2022Updated 3 years ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- BEAST analysis backing effective linguistics☆12May 4, 2025Updated last year
- Scalable relaxed clock phylogenetic dating☆27Sep 3, 2025Updated 9 months ago
- Automatically exported from code.google.com/p/densitree☆30Jul 27, 2025Updated 10 months ago
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Oct 14, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Variant call verification☆17May 12, 2025Updated last year
- Tools for visualizing and comparing data from vertebrate retinas☆14Jan 20, 2025Updated last year
- ☆20Jun 15, 2024Updated last year
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 6 months ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆22Aug 11, 2025Updated 9 months ago
- R client for Dryad web services☆26May 22, 2026Updated 2 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A small R package to make sequencing read coverage plots in R.☆42Apr 3, 2026Updated 2 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- This is the raw data and code repository of the SARS-ANI project on SARS-CoV-2 events in animals.☆17Jun 3, 2025Updated last year
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- Tutorial on Bayesian phylogenetic analysis☆52Sep 21, 2017Updated 8 years ago
- A snakemake pipeline for 10X genomics cellranger☆22Oct 13, 2025Updated 7 months ago
- Scripts, utilities and programs for genomic bioinformatics.☆83May 12, 2026Updated 3 weeks ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- University of Cincinnati ggplot2 workshop☆10Apr 16, 2019Updated 7 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34Jun 1, 2026Updated last week
- Pathogen evolution, selection and immunity☆46Mar 5, 2024Updated 2 years ago
- ☆20Feb 25, 2025Updated last year
- R package to run BEAST2☆11Dec 8, 2025Updated 6 months ago