jbloomlab / phydmsLinks
phylogenetic analyses informed by deep mutational scanning data
☆15Updated last year
Alternatives and similar repositories for phydms
Users that are interested in phydms are comparing it to the libraries listed below
Sorting:
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 2 months ago
- ☆12Updated 6 years ago
- PanGenomePipeline☆16Updated last year
- Lecture on viral phylodynamics☆12Updated 3 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12Updated 10 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 7 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated last month
- ☆19Updated last year
- ☆27Updated last year
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last month
- k-mer similarity analysis pipeline☆23Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆25Updated 2 weeks ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- Automatically exported from code.google.com/p/qsimscan☆13Updated 3 years ago
- Quality control for phylogenetic analyses☆13Updated last month
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- ☆10Updated 4 months ago
- ☆31Updated 3 years ago
- ☆17Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆17Updated 10 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year