McTavishLab / physcraperLinks
Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.
☆13Updated 3 years ago
Alternatives and similar repositories for physcraper
Users that are interested in physcraper are comparing it to the libraries listed below
Sorting:
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- reference free variant assembly☆34Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- ☆18Updated 8 years ago
- Reference genome quality scores☆21Updated 5 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Assemble the Genome in a Bottle sequencing data☆10Updated 8 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 9 years ago
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 8 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Clann: constructing consensus trees and supertrees from multiple source trees☆18Updated 9 months ago
- ☆15Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Annotate your metagenome assemblies☆11Updated 7 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 8 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- ☆16Updated 2 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Updated last year
- blast, shmlast☆21Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago