PAGAN2 multiple sequence aligner
☆12Jul 2, 2024Updated last year
Alternatives and similar repositories for pagan2-msa
Users that are interested in pagan2-msa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically exported from code.google.com/p/prank-msa☆33Mar 19, 2026Updated 3 weeks ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Aug 28, 2018Updated 7 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆63Mar 15, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- EasyCodeML: A visual tool for analysis of selection using CodeML☆84May 7, 2023Updated 2 years ago
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 3 weeks ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- ☆16Apr 11, 2026Updated last week
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- fast sequence evolution simulation for SARS-CoV-2 and similar☆24Apr 11, 2025Updated last year
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆14Nov 20, 2025Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆63Mar 3, 2026Updated last month
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆80Apr 11, 2026Updated last week
- ☆14May 22, 2025Updated 10 months ago
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- 新东方乐词app中的词书提取，使用海词接口获取词条解释制作Anki单词卡☆19Mar 28, 2022Updated 4 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆39Updated this week
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 8 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 3 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 10 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated 3 weeks ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated this week
- Infer the age of ancestral nodes in a tree sequence.☆25Apr 4, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- ☆12Apr 4, 2026Updated 2 weeks ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- Next generation sequence parameter library for proteins☆39Feb 18, 2026Updated 2 months ago