PAGAN2 multiple sequence aligner
☆12Jul 2, 2024Updated 2 years ago
Alternatives and similar repositories for pagan2-msa
Users that are interested in pagan2-msa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically exported from code.google.com/p/prank-msa☆37Mar 19, 2026Updated 3 months ago
- stageR package☆13May 8, 2026Updated 2 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 7 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated 2 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆64Mar 15, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- EasyCodeML: A visual tool for analysis of selection using CodeML☆85May 7, 2023Updated 3 years ago
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 3 months ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 5 years ago
- ☆16Apr 11, 2026Updated 2 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 7 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- fast sequence evolution simulation for SARS-CoV-2 and similar☆24Apr 11, 2025Updated last year
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆14Nov 20, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Apr 30, 2026Updated 2 months ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆86Updated this week
- ☆14May 22, 2025Updated last year
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- 新东方乐词app中的词书提取,使用海词接口获取词条解释制作Anki单词卡☆20Mar 28, 2022Updated 4 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆40Jun 28, 2026Updated last week
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 10 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 6 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated 9 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 2 months ago
- Infer the age of ancestral nodes in a tree sequence.☆27Jun 30, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 7 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated last month
- ☆12Apr 28, 2026Updated 2 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- Next generation sequence parameter library for proteins☆41Jun 9, 2026Updated 3 weeks ago