AliTVTeam / AliTV-perl-interface
☆10Updated 3 years ago
Alternatives and similar repositories for AliTV-perl-interface:
Users that are interested in AliTV-perl-interface are comparing it to the libraries listed below
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- ☆19Updated 10 months ago
- ☆15Updated 7 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- transposable element typing pipeline☆17Updated last year
- ☆10Updated 4 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆18Updated last week
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆14Updated 2 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆14Updated 3 years ago
- Consensus genome annotation using OMA☆23Updated 4 months ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- Quality control for phylogenetic analyses☆13Updated last month
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆9Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago