☆11Sep 16, 2021Updated 4 years ago
Alternatives and similar repositories for AliTV-perl-interface
Users that are interested in AliTV-perl-interface are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 6 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- ☆12Feb 16, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- ☆13Mar 28, 2018Updated 8 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- An easy way to run BioNano genomic analysis☆27Apr 9, 2021Updated 5 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Visualize whole genome alignments as linear maps☆74Mar 27, 2026Updated 2 months ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Apr 21, 2026Updated last month
- A high performance tool to identify orthologs and paralogs across genomes.☆26Mar 8, 2023Updated 3 years ago
- ☆16Jul 25, 2021Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Feb 18, 2022Updated 4 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Synteny Imager☆66Dec 18, 2025Updated 5 months ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 5 months ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆70Oct 29, 2020Updated 5 years ago
- stageR package☆13May 8, 2026Updated last month
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- ☆27Aug 29, 2025Updated 9 months ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Post Assembly Variants Finder☆18Mar 24, 2026Updated 2 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- Genome wide orthology inference and dNdS estimation☆101Jun 4, 2026Updated last week
- ☆30Apr 16, 2023Updated 3 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- ☆11Feb 20, 2024Updated 2 years ago