Alternatives and similar repositories for AliTV-perl-interface

Users that are interested in AliTV-perl-interface are comparing it to the libraries listed below

• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 9 years ago
• duchene / phylomad
  ☆19Updated last year
• DessimozLab / omamer
  OMAmer - tree-driven and alignment-free protein assignment to sub-families
  ☆19Updated this week
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• SR-Martin / alvis
  ☆20Updated last year
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated 11 months ago
• MartinPippel / DAmar
  Long read QC, assembly and scaffolding pipeline
  ☆13Updated 5 years ago
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 8 months ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 4 years ago
• ariloytynoja / pagan2-msa
  PAGAN2 multiple sequence aligner
  ☆12Updated last year
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• luntergroup / smcsmc
  Demographic inference from whole genomes
  ☆13Updated 2 years ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated last week
• DessimozLab / pyham
  ☆11Updated 2 weeks ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 months ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆24Updated 2 weeks ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆16Updated 4 months ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated last year
• alexherbig / MultiVCFAnalyzer
  ☆14Updated 5 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• xa6xa6 / metaOthello
  ☆16Updated 7 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated last month
• chg60 / phammseqs
  Assort phage protein sequences into phamilies using MMseqs2
  ☆10Updated 8 months ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 8 months ago