Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
☆15Oct 15, 2018Updated 7 years ago
Alternatives and similar repositories for dekupl
Users that are interested in dekupl are comparing it to the libraries listed below
Sorting:
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- ☆15Apr 19, 2018Updated 7 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Mar 13, 2026Updated last week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 2 months ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- ☆14Dec 22, 2025Updated 3 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Dec 30, 2025Updated 2 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Simply feedforward neural network☆19Oct 4, 2016Updated 9 years ago
- ARCHIVED Access sequences from the 1000 Plant Initiative (1KP)☆13Nov 7, 2025Updated 4 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Nov 25, 2025Updated 3 months ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Jul 22, 2024Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- ☆12May 26, 2020Updated 5 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 10 months ago
- long read RNA-seq quantification☆106Updated this week
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 8 months ago
- Phylocom R interface☆15Apr 21, 2023Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- Nim wrapper for the miniz library.☆10Mar 21, 2020Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated this week
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- L2T2 Database Term Project, clone of Codeforces☆14Dec 11, 2020Updated 5 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Jan 14, 2026Updated 2 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆60Feb 26, 2025Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆36Nov 12, 2025Updated 4 months ago