Transipedia / dekupl
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
☆15Updated 6 years ago
Alternatives and similar repositories for dekupl:
Users that are interested in dekupl are comparing it to the libraries listed below
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- Two pass alignment for long reads☆21Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Adapters for trimming☆30Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- toolkit to process gtf files☆16Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Functions to compare a SV call sets against a truth set.☆28Updated 9 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 4 months ago
- Evolutionary Transcriptomics with R☆42Updated last week
- Personal diploid genome creation and coordinate conversion☆23Updated this week
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year