Transipedia / dekuplLinks
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
☆15Updated 6 years ago
Alternatives and similar repositories for dekupl
Users that are interested in dekupl are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- ☆26Updated 6 years ago
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 4 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 weeks ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Ultra Fast NGS Data QC Tool☆27Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- Teaching modules for Human Genome Variation Lab.☆20Updated 4 months ago