Transipedia / dekupl
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
☆15Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for dekupl
- A command line tool to compute mapping statistics from a BAM file☆22Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆26Updated 6 months ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated last year
- ☆11Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Adapters for trimming☆30Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- ☆12Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- transposable element typing pipeline☆16Updated 8 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated last month
- Two pass alignment for long reads☆20Updated 3 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago