AuReMe / emapper2gbk
Convert GFF, fastas, annotation table and species name into Genbank.
☆14Updated last month
Alternatives and similar repositories for emapper2gbk:
Users that are interested in emapper2gbk are comparing it to the libraries listed below
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆42Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated 3 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated last month
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- A toolkit for prokaryotic comparative genomics☆48Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆52Updated 3 years ago
- IS mapping software☆54Updated 3 years ago
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- whole genome MLST analysis☆42Updated last month
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 9 months ago
- IslandPath standalone software☆32Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago