☆21Oct 9, 2025Updated 4 months ago
Alternatives and similar repositories for evosite3d
Users that are interested in evosite3d are comparing it to the libraries listed below
Sorting:
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆40Jan 21, 2026Updated last month
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- mdml: Deep Learning for Molecular Simulations☆52May 17, 2025Updated 9 months ago
- Rank binders by structure modeling☆16Mar 10, 2025Updated 11 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated last year
- Code for running BinderFlow☆62Nov 21, 2025Updated 3 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆21Oct 31, 2025Updated 4 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆31Feb 12, 2026Updated 2 weeks ago
- Molecular Dynamics for Experimentalists☆66Nov 18, 2025Updated 3 months ago
- ☆14Oct 5, 2024Updated last year
- Weighted Ensemble Data Analysis and Plotting☆26Dec 11, 2025Updated 2 months ago
- ☆11May 16, 2020Updated 5 years ago
- Tokenizing Loops of Antibodies☆24Nov 23, 2025Updated 3 months ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- ☆13May 19, 2025Updated 9 months ago
- Energy-guided binder design pipeline built on BindCraft☆16Jun 6, 2025Updated 8 months ago
- ☆15Apr 3, 2025Updated 10 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆49Feb 20, 2026Updated last week
- ☆63Dec 8, 2025Updated 2 months ago
- A drop-in replacement for Rosetta Relax☆27Jan 30, 2026Updated last month
- ☆15Sep 29, 2025Updated 5 months ago
- Demos of many Rosetta applications☆22Jun 10, 2025Updated 8 months ago
- Quantum-mechanical molecular representations☆28Jan 27, 2026Updated last month
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 2 years ago
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 5 months ago
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆17Oct 31, 2025Updated 4 months ago
- Code for running RFdiffusion☆19Dec 1, 2025Updated 3 months ago
- It's a package for evaluation of predicted poses, right?☆73Feb 17, 2026Updated last week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆53Dec 9, 2025Updated 2 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Dec 2, 2025Updated 3 months ago
- ☆65Apr 8, 2025Updated 10 months ago
- ☆143Aug 17, 2022Updated 3 years ago
- ☆15Feb 18, 2026Updated last week
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆61Jan 30, 2026Updated last month
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- ☆30Aug 27, 2025Updated 6 months ago
- ☆15Jun 11, 2021Updated 4 years ago