tanghaibao / mcscanLinks
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
☆21Updated 15 years ago
Alternatives and similar repositories for mcscan
Users that are interested in mcscan are comparing it to the libraries listed below
Sorting:
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆35Updated 8 years ago
- ☆28Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- ☆51Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆11Updated last year
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- ☆21Updated 6 years ago
- Pipeline for Phylostratigraphy☆13Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- iTAK☆45Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Evolutionary Transcriptomics with R☆49Updated last month
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- A transposition caller.☆11Updated 2 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 months ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 4 months ago