phylogeography / SPREADv1Links
Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
☆20Updated 6 years ago
Alternatives and similar repositories for SPREADv1
Users that are interested in SPREADv1 are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- R We There Yet?☆32Updated 9 months ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- initial commit☆26Updated 3 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- ☆18Updated 2 months ago
- ☆19Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- ☆67Updated 9 years ago
- Reconstruction of transmission trees using genomic data☆69Updated 2 years ago
- Visualization tool for genetic reassortment☆21Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- ☆28Updated last year
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆29Updated 5 months ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆10Updated 5 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- R shiny app for interactive microbiome analysis☆56Updated 6 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆16Updated 2 years ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- ☆14Updated 5 years ago