Alternatives and similar repositories for SPREADv1

Users that are interested in SPREADv1 are comparing it to the libraries listed below

• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated last month
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 7 months ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 6 years ago
• emvolz-phylodynamics / treestructure
  ☆18Updated 3 weeks ago
• serratus-bio / tantalus
  R Data Exploration for Serratus
  ☆15Updated 2 years ago
• duchene / phylomad
  ☆19Updated last year
• reptalex / phylofactor
  ☆28Updated last year
• katholt / plotTree
  ☆67Updated 9 years ago
• alk224 / akutils-v1.2
  akutils with massive updates over v1.1 to functionality and command line interface.
  ☆15Updated 6 years ago
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆22Updated 5 years ago
• cboursnell / transfuse
  Merge transcriptome assemblies
  ☆31Updated 9 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• YuLab-SMU / seqcombo
  Visualization tool for genetic reassortment
  ☆21Updated 6 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated last month
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 5 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• mortonjt / ancomP
  Analysis of Composition of Microbiomes
  ☆11Updated 9 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 7 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last month
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated 2 years ago
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• blab / global-migration
  Analysis of global migration patterns of seasonal influenza viruses
  ☆22Updated 6 years ago
• phylogeography / SpreaD3
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆16Updated 2 years ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 5 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 4 years ago
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year