Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
☆20Jan 13, 2019Updated 7 years ago
Alternatives and similar repositories for SPREADv1
Users that are interested in SPREADv1 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data and scripts for Zika virus tutorial☆10Jul 21, 2026Updated last week
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 3 months ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 weeks ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Make and use nested directory trees corresponding to combinatorial choices of parameters☆20Apr 23, 2017Updated 9 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated last month
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 7 years ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jul 2, 2026Updated 3 weeks ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 2 months ago
- A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments☆11Dec 1, 2020Updated 5 years ago
- Phylogenetic placement and downstream analysis☆95Jan 28, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Bayesian Evolutionary Analysis Sampling Trees☆248Updated this week
- ☆20Jun 15, 2024Updated 2 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- Browser-based Interactive Phylogeographic Animations☆20Aug 29, 2017Updated 8 years ago
- RethinkDB database to support real-time virus analysis☆35Updated this week
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 3 months ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with inform…☆29Nov 9, 2017Updated 8 years ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆22Aug 11, 2025Updated 11 months ago
- Taxonomy-aware DNA sequence processing toolkit☆34Jun 7, 2026Updated last month
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 3 years ago
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated 3 weeks ago
- ☆18Jun 11, 2024Updated 2 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- Model-based time series clustering using variational inference.☆12Oct 28, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python-interface C++ library for Bayesian phylogenetics via optimization☆41Apr 8, 2024Updated 2 years ago
- ☆13Jul 21, 2026Updated last week
- general purpose library for evaluating the likelihood of sequence evolution on trees☆147Jul 11, 2026Updated 2 weeks ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- Real-time tracking of influenza evolution☆91Sep 8, 2023Updated 2 years ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago