phylogeography / SPREADv1Links
Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
☆20Updated 6 years ago
Alternatives and similar repositories for SPREADv1
Users that are interested in SPREADv1 are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆25Updated last month
- R We There Yet?☆31Updated 6 months ago
- ☆19Updated last year
- ggtree version of plotTree.R☆18Updated 6 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- initial commit☆26Updated 2 years ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- ☆18Updated last week
- ☆67Updated 9 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- Analysis of Composition of Microbiomes☆11Updated 9 years ago
- ☆12Updated 6 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 weeks ago
- ☆18Updated 8 years ago
- Visualization tool for genetic reassortment☆21Updated 5 months ago
- ☆14Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- ☆28Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago