fhcrc / seqmagick
An imagemagick-like frontend to Biopython SeqIO
☆112Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for seqmagick
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated 7 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- A fork of exonerate: a generic tool for sequence alignment☆61Updated 11 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆93Updated 3 weeks ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆108Updated 5 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆89Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆110Updated 3 months ago
- Development version of Easyfig☆89Updated 10 months ago
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆86Updated last month
- ☆78Updated last year
- "Reads to report" for public health and clinical microbiology☆136Updated 7 months ago
- Assembly statistic visualisation☆88Updated 10 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated last year
- Synteny Imager☆60Updated 2 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated 11 months ago
- accurate LiftOver tool for new genome assemblies☆110Updated 3 months ago
- Convert various sequence formats to FASTA☆127Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated 11 months ago
- ☆35Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 3 years ago
- Bioinformatics Tools☆81Updated 2 weeks ago
- ONT assembly and Illumina polishing pipeline☆91Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆117Updated 8 months ago
- Massively parallel phylogenetic placement of genetic sequences☆78Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆108Updated last year