fhcrc / seqmagick
An imagemagick-like frontend to Biopython SeqIO
☆115Updated last year
Alternatives and similar repositories for seqmagick
Users that are interested in seqmagick are comparing it to the libraries listed below
Sorting:
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated 2 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆122Updated last year
- DDBJ Fast Annotation and Submission Tool☆80Updated last week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 11 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆201Updated 8 months ago
- Bioinformatics Tools☆87Updated last month
- Interactive quality assessment of genome assemblies☆99Updated this week
- Calculate summary statistics and manipulate multiple sequence alignments☆81Updated last year
- Assembly statistic visualisation☆90Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆135Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆112Updated last year
- Create a tree using Mash distances☆163Updated last year
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 4 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Trinotate source code☆80Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated this week
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆91Updated 2 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- ☆82Updated last year
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆127Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- Error correction for Illumina RNA-seq reads☆66Updated last year
- Collection of scripts for bacterial genomics☆45Updated 5 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated last month
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆102Updated 3 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago