igsr / 1000Genomes_data_indexes
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
☆42Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for 1000Genomes_data_indexes
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- ☆51Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 5 years ago
- CNV screening and annotation tool☆24Updated 8 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated this week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- ☆78Updated 10 years ago
- R package for inferring copy number from read depth☆31Updated 2 years ago
- PHAST☆68Updated this week
- Tip and tricks for BAM files☆84Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆27Updated 3 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Updated 3 years ago
- A software for calculating telomere length☆67Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 2 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆18Updated 3 months ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- ☆52Updated 4 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago