The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
☆47Jul 15, 2019Updated 7 years ago
Alternatives and similar repositories for 1000Genomes_data_indexes
Users that are interested in 1000Genomes_data_indexes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project☆15Jul 30, 2024Updated 2 years ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated 3 months ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19May 10, 2023Updated 3 years ago
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- Time-stratified f-statistics☆17Aug 1, 2025Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- GTM and t-SNE classification and clustering of 1000 Genomes Project populations☆13Feb 18, 2019Updated 7 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Get SNP proxies from the 1000 Genomes Project.☆31Oct 4, 2018Updated 7 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 weeks ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆108Updated this week
- Assemblies from HPP Year 1 production☆82May 9, 2023Updated 3 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆226Aug 7, 2026Updated last month
- Segmented HAPlotype Estimation and Imputation Tool☆100May 19, 2026Updated 3 months ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Jul 1, 2026Updated 2 months ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆22Apr 15, 2024Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆36Updated this week
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 3 months ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Pinpoints the mutation favored by selection☆35Nov 2, 2021Updated 4 years ago
- Genetic maps interpolated to sites in the 1000 Genomes project☆53Apr 21, 2015Updated 11 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- ☆37Nov 30, 2023Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 5 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Aug 21, 2026Updated 2 weeks ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆45May 13, 2026Updated 3 months ago