katarinabraun / SARS-CoV-2_sequencingLinks
SARS-CoV-2 Deep Sequencing
☆14Updated 5 years ago
Alternatives and similar repositories for SARS-CoV-2_sequencing
Users that are interested in SARS-CoV-2_sequencing are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- Pan gGnome Viewer☆10Updated 5 months ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- ☆16Updated 4 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆24Updated 4 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Variant call adjudication☆16Updated last year
- MEM mapper prototype☆13Updated 5 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- ☆12Updated 3 months ago
- ☆14Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- ☆28Updated 8 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago