PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
☆14Apr 5, 2025Updated last year
Alternatives and similar repositories for 1000G-ONT-F100-PGGB
Users that are interested in 1000G-ONT-F100-PGGB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆15Jul 21, 2022Updated 4 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 6 months ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Jul 1, 2026Updated 3 months ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Aug 27, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 6 years ago
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- ☆29Sep 28, 2024Updated 2 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 9 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- ☆19May 10, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Jul 3, 2026Updated 3 months ago
- COsine SImilarity-based Genotyper using pangenomes☆40Updated this week
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated last week
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆42Aug 12, 2026Updated 2 months ago
- The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource☆47Jul 15, 2019Updated 7 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- ☆42Jul 3, 2025Updated last year
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated 2 weeks ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆23Jul 23, 2026Updated 2 months ago
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago