AndreaGuarracino / 1000G-ONT-F100-PGGB
PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
☆12Updated 3 weeks ago
Alternatives and similar repositories for 1000G-ONT-F100-PGGB:
Users that are interested in 1000G-ONT-F100-PGGB are comparing it to the libraries listed below
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 6 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago
- Genome Assembly 102☆14Updated this week
- ☆19Updated 4 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated 2 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- ☆16Updated 3 years ago
- ☆17Updated last month
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Tandem repeat genotyping with long reads☆28Updated 2 months ago
- Phasing reads with secondary alignments☆18Updated 4 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Convert HAL to VG☆22Updated 8 months ago
- ☆17Updated 2 weeks ago
- recompute GFA link overlaps☆25Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆12Updated 2 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated 8 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 6 months ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- General purpose utility related to GAF files☆24Updated last week
- ☆17Updated last year
- convert variation graph alignments to coverage maps over nodes☆23Updated 2 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 4 months ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year