AndreaGuarracino / 1000G-ONT-F100-PGGBLinks
PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
☆12Updated 6 months ago
Alternatives and similar repositories for 1000G-ONT-F100-PGGB
Users that are interested in 1000G-ONT-F100-PGGB are comparing it to the libraries listed below
Sorting:
- Tandem repeat genotyping with long reads☆32Updated last month
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Convert HAL to VG☆22Updated last year
- General purpose utility related to GAF files☆29Updated last month
- ☆21Updated 8 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆25Updated 2 months ago
- Phasing reads with secondary alignments☆21Updated 11 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
- Genome Assembly 102☆14Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Prefix-renaming FASTA records really fast.☆16Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- base-level dotplots from PAF alignments☆27Updated last month
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆16Updated 3 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆11Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- ☆17Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated this week
- JTK -- a regional diploid genome assembler☆25Updated last year