pairwise-alignment / pa-benchLinks
Benchmarking pairwise aligners
☆36Updated 5 months ago
Alternatives and similar repositories for pa-bench
Users that are interested in pa-bench are comparing it to the libraries listed below
Sorting:
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated 3 weeks ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆52Updated this week
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- A long read simulator based on badread idea☆22Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 9 months ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Python language bindings for bwa☆10Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- GBWT in Rust☆43Updated 3 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- Optimal sequence-to-graph alignment with recombinations☆36Updated 4 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 weeks ago
- Pan-Genomic Matching Statistics☆52Updated last year
- implicit pangenome graph☆65Updated last week