pairwise-alignment / pa-benchLinks
Benchmarking pairwise aligners
☆36Updated 7 months ago
Alternatives and similar repositories for pa-bench
Users that are interested in pa-bench are comparing it to the libraries listed below
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 5 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- Fast and exact gap-affine partial order alignment☆54Updated 3 weeks ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- A long read simulator based on badread idea☆22Updated 2 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 10 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- ☆22Updated 2 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- Optimal sequence-to-graph alignment with recombinations☆36Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 11 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- implicit pangenome graph☆70Updated last week
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- GBWT in Rust☆42Updated 6 months ago
- ☆16Updated 2 years ago
- Bidirectional WFA (Paper)☆47Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- ☆17Updated 4 years ago