langmead-lab / vargasLinks
☆24Updated last month
Alternatives and similar repositories for vargas
Users that are interested in vargas are comparing it to the libraries listed below
Sorting:
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- ☆28Updated 5 months ago
- GBWT-based handle graph☆31Updated last week
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 6 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆16Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Long-read aligner to pangenome graphs☆27Updated last year
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆17Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago