hr1912 / TreeExpLinks
TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
☆15Updated 6 years ago
Alternatives and similar repositories for TreeExp
Users that are interested in TreeExp are comparing it to the libraries listed below
Sorting:
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆34Updated last month
- Micro DNA identification☆23Updated 4 years ago
- ☆22Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆39Updated 4 years ago
- ☆37Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- ☆22Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ☆23Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆17Updated 7 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Somatic point mutation caller☆32Updated 8 months ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- Tutorial Website☆61Updated 4 years ago