hr1912 / TreeExp
TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
☆15Updated 5 years ago
Alternatives and similar repositories for TreeExp:
Users that are interested in TreeExp are comparing it to the libraries listed below
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆17Updated 5 years ago
- Published methods☆15Updated 8 years ago
- ☆23Updated 3 years ago
- ☆15Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆26Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- Genomic Association Tester☆29Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated 2 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆30Updated 3 years ago
- Micro DNA identification☆22Updated 3 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆19Updated last week
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- RNA editing tests☆16Updated 4 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated last week
- ☆35Updated 5 years ago
- ☆13Updated 7 years ago
- chia pet analysis software☆25Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆37Updated last week