hr1912 / TreeExp
TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
☆15Updated 5 years ago
Alternatives and similar repositories for TreeExp:
Users that are interested in TreeExp are comparing it to the libraries listed below
- Genomic Association Tester☆31Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆41Updated this week
- ☆23Updated 3 years ago
- ☆28Updated 4 months ago
- ☆16Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆23Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Micro DNA identification☆22Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- ☆22Updated 4 months ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆12Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- chia pet analysis software☆25Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 3 weeks ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- ☆20Updated 4 years ago