AllenWLynch / lisa
☆16Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for lisa
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- ☆17Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆30Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- ☆33Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆40Updated 3 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆20Updated 5 years ago