☆17Feb 11, 2024Updated 2 years ago
Alternatives and similar repositories for lisa
Users that are interested in lisa are comparing it to the libraries listed below
Sorting:
- Pipeline for generating RNAseq-based cancer patient reports☆11Feb 26, 2026Updated last week
- Provides classes for working with sets☆11Dec 19, 2025Updated 2 months ago
- ☆33Nov 9, 2022Updated 3 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 9 months ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 4 years ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated last month
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- epigenome analysis to rank transcription factors☆32Feb 2, 2023Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Jul 8, 2025Updated 7 months ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 4 years ago
- ☆16Jan 15, 2025Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- ☆18Apr 20, 2025Updated 10 months ago
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 4 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago
- sort genomic data☆36Nov 7, 2025Updated 3 months ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆39Feb 10, 2026Updated 3 weeks ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Somatic workflow for Kids-First☆15Nov 10, 2025Updated 3 months ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- A Carpentries-style lesson on RNA-Sequencing☆19May 1, 2023Updated 2 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Feb 1, 2024Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Jan 23, 2026Updated last month
- A library and tool for accessing remote BLOW5 files.☆24Feb 5, 2026Updated last month
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 2 years ago
- ☆27Updated this week
- ☆25Dec 18, 2024Updated last year