AllenWLynch / lisaLinks
☆17Updated last year
Alternatives and similar repositories for lisa
Users that are interested in lisa are comparing it to the libraries listed below
Sorting:
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- binned motif enrichment analysis and visualisation☆40Updated last week
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- ☆34Updated 6 years ago
- ☆38Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- ☆19Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 9 years ago
- Docker container for genomics analyses in R.☆25Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A single cell sequencing read simulator.☆33Updated 9 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- ☆49Updated 11 months ago
- Predicting regulatory DNA elements based on epigenomic signatures☆27Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago