An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
☆28Oct 4, 2023Updated 2 years ago
Alternatives and similar repositories for SPLiT-Seq_demultiplexing
Users that are interested in SPLiT-Seq_demultiplexing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Apr 17, 2020Updated 6 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 5 years ago
- ☆11Dec 17, 2019Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…☆18Oct 12, 2021Updated 4 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆16Apr 15, 2025Updated last year
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆26Apr 13, 2025Updated last year
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 10 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dose response curves and DIP rates for cell proliferation data in Python☆14Updated this week
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- Documentation for the ISB-CGC on Read the Docs.☆11Apr 15, 2026Updated 2 weeks ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- examples to run monorail externally☆20Mar 7, 2026Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆100Apr 16, 2026Updated 2 weeks ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated 6 months ago
- ☆10May 14, 2025Updated 11 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- ☆19Jun 5, 2024Updated last year
- Statistical Analysis of High Dimensional Data☆14Feb 20, 2026Updated 2 months ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆25Feb 1, 2020Updated 6 years ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆25Dec 19, 2024Updated last year
- Arima Capture HiC pipeline (Arima-CHiC)☆13May 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tutorials on using latest dynamo package☆27Dec 21, 2025Updated 4 months ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated last year
- ☆15Apr 22, 2022Updated 4 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆14Apr 8, 2026Updated 3 weeks ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year