An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
☆28Oct 4, 2023Updated 2 years ago
Alternatives and similar repositories for SPLiT-Seq_demultiplexing
Users that are interested in SPLiT-Seq_demultiplexing are comparing it to the libraries listed below
Sorting:
- ☆23Apr 17, 2020Updated 5 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…☆18Oct 12, 2021Updated 4 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆15Apr 15, 2025Updated 11 months ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆26Apr 13, 2025Updated 11 months ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 10 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- Dose response curves and DIP rates for cell proliferation data in Python☆14Mar 13, 2026Updated last week
- Documentation for the ISB-CGC on Read the Docs.☆11Jan 20, 2026Updated 2 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- examples to run monorail externally☆20Mar 7, 2026Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆97Feb 23, 2026Updated 3 weeks ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated last year
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated 5 months ago
- ☆10May 14, 2025Updated 10 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- ☆19Jun 5, 2024Updated last year
- Statistical Analysis of High Dimensional Data☆14Feb 20, 2026Updated last month
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆24Feb 1, 2020Updated 6 years ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆24Dec 19, 2024Updated last year
- Arima Capture HiC pipeline (Arima-CHiC)☆12May 16, 2024Updated last year
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆11May 31, 2024Updated last year
- ☆14Apr 22, 2022Updated 3 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Feb 5, 2026Updated last month
- bridges the log crate and indicatif to stop the progress bars and log lines from mixing up☆11Aug 24, 2024Updated last year
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 10 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago