Python framework for single-cell RNA-seq clustering with special focus on transfer learning.
☆18Aug 29, 2019Updated 6 years ago
Alternatives and similar repositories for scRNA
Users that are interested in scRNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆12Jan 5, 2023Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 5 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆30Oct 16, 2021Updated 4 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- Big Data and Machine Intelligence, Spring 2021.☆12Jul 2, 2021Updated 4 years ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆17Apr 26, 2021Updated 4 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…☆29Feb 19, 2020Updated 6 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 8 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- Disease Gene Prioritization with Privileged Information and Heteroscedastic Dropout☆11Jan 28, 2021Updated 5 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 4 years ago
- ☆28Jan 28, 2020Updated 6 years ago
- ☆17Sep 20, 2020Updated 5 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Mar 26, 2026Updated 2 weeks ago
- Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schaffli…☆22Jun 17, 2021Updated 4 years ago
- AutoImpute : Autoencoder based imputation of single cell RNA-seq data☆28Aug 17, 2020Updated 5 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Nov 16, 2020Updated 5 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Lightweight pipeline for processing droplet-based single-cell RNA-seq data☆18Nov 4, 2020Updated 5 years ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Jun 14, 2022Updated 3 years ago
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- R package for bcbio single-cell RNA-seq analysis.☆30Sep 9, 2024Updated last year
- R package for robust clustering of single cell RNA sequencing data☆40Jul 10, 2023Updated 2 years ago