GLBRC / sppIDerLinks
a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
☆19Updated 5 years ago
Alternatives and similar repositories for sppIDer
Users that are interested in sppIDer are comparing it to the libraries listed below
Sorting:
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- A box of genomics tools☆21Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆16Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Updated 6 months ago
- The MafFilter genome alignment processor☆18Updated last month
- Diploid genome assembly analysis tools☆14Updated 9 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- Domain based annotation of transposable elements☆19Updated last month
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆15Updated 3 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Resources for the Col-CEN reference genome assemblies☆11Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆22Updated this week
- Software package for estimating fine-scale recombination rate.☆14Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆12Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago