Alternatives and similar repositories for sppIDer

Users that are interested in sppIDer are comparing it to the libraries listed below

• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated last year
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆15Updated 3 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 5 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆13Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated 9 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 6 months ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 6 months ago
• tbenavi1 / KMC
  Fast and frugal disk based k-mer counter
  ☆14Updated 4 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 4 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆31Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆19Updated last year
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆29Updated 3 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• mrvollger / NucFreq
  ☆37Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 3 months ago
• MoritzBlumer / winpca
  WinPCA. A package for windowed principal component analysis.
  ☆33Updated 2 weeks ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated 2 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆18Updated 5 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• c-zhou / polyGembler
  ☆16Updated 3 years ago
• SAMtoBAM / PhasedDiploidGenomeAssemblyPipeline
  Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
  ☆23Updated last week
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 6 years ago