GLBRC / sppIDer
a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
☆18Updated 5 years ago
Alternatives and similar repositories for sppIDer:
Users that are interested in sppIDer are comparing it to the libraries listed below
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- A box of genomics tools☆21Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Genome-wide scan for balancing selection using beta statistic☆29Updated last year
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- Analyze and simulate Pool-Seq time series data☆15Updated 2 years ago
- ☆19Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Deleterious mutation prediction pipeline☆13Updated 4 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆12Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Diploid genome assembly analysis tools☆14Updated 7 months ago
- Genome alignment and synteny plots☆30Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- ☆16Updated 2 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆29Updated 3 months ago
- ☆24Updated 7 years ago
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 months ago