etabari / PorthoMCL
Parallel implementation of OrthoMCL
☆21Updated 2 years ago
Related projects: ⓘ
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 2 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- ☆23Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- ☆19Updated 9 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- The MafFilter genome alignment processor☆17Updated this week
- Just Annotate My Genome☆18Updated 5 months ago
- A comparative genome scaffolding tool☆17Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 3 years ago
- Visualising discordant reads☆14Updated 9 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆12Updated 5 years ago
- Genome-Genome circle synteny☆22Updated 9 months ago
- ☆24Updated last year
- A box of genomics tools☆21Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated last year
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Updated last year