pk7zuva / Circle_finderLinks
Micro DNA identification
☆24Updated 4 years ago
Alternatives and similar repositories for Circle_finder
Users that are interested in Circle_finder are comparing it to the libraries listed below
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 11 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆22Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆34Updated 11 months ago
- ☆13Updated 8 years ago
- ☆37Updated 6 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ☆22Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆16Updated 3 weeks ago
- An R package to time somatic mutations☆64Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- ☆23Updated 4 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- ☆23Updated 8 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆13Updated 3 years ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Updated last year
- 4C-seq processing pipeline☆26Updated 7 months ago
- ☆23Updated 10 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago