pk7zuva / Circle_finderLinks
Micro DNA identification
☆24Updated 4 years ago
Alternatives and similar repositories for Circle_finder
Users that are interested in Circle_finder are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- ☆23Updated 4 years ago
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆32Updated 9 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- Somatic point mutation caller☆31Updated 4 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- 4C-seq processing pipeline☆24Updated 5 months ago
- ☆37Updated 6 years ago
- ☆12Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆22Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- RNA editing tests☆17Updated 4 years ago
- ☆32Updated 9 months ago
- ☆13Updated 2 years ago
- ☆13Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago