GMOD / jbrowse-jupyterView external linksLinks
A python package for showing JBrowse views
☆26Jan 3, 2024Updated 2 years ago
Alternatives and similar repositories for jbrowse-jupyter
Users that are interested in jbrowse-jupyter are comparing it to the libraries listed below
Sorting:
- A suite of Dash components for JBrowse's embeddable components☆14Jan 3, 2024Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 5 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Sep 23, 2025Updated 4 months ago
- Kinship In Mixed Model Analysis of RNA-seq☆14Apr 14, 2025Updated 10 months ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 8 months ago
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Jan 20, 2026Updated 3 weeks ago
- Visualization tool for (meta)genome assembly graphs☆24Feb 10, 2026Updated last week
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆26Aug 15, 2025Updated 6 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- A pipeline that accepts a VCF file to run through Admixture☆63Jan 2, 2025Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Nov 6, 2025Updated 3 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 4 months ago
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 5 years ago
- ☆10Feb 23, 2024Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆10Sep 1, 2020Updated 5 years ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆10Sep 3, 2025Updated 5 months ago
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆11Oct 5, 2020Updated 5 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- ☆10Sep 14, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- Interactive visualisation of CellphoneDB results☆11Jan 15, 2025Updated last year
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago