GMOD / jbrowse-jupyterLinks
A python package for showing JBrowse views
☆26Updated last year
Alternatives and similar repositories for jbrowse-jupyter
Users that are interested in jbrowse-jupyter are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- ☆39Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- Two pass alignment for long reads☆22Updated 4 years ago
- Long RNA-seq analysis workflow☆19Updated this week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- ☆17Updated last month
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Blazing fast toolkit to work with .hic and .cool files☆38Updated last week
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆35Updated 3 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- ☆20Updated 3 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- interactive plots for differential expression analysis☆34Updated 2 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Processing and plotting tools for genomics data☆21Updated last month
- a minimal, scriptable genome browser for python☆51Updated 8 months ago
- ☆18Updated 5 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago