GMOD / jbrowse-jupyter
A python package for showing JBrowse views
☆23Updated last year
Alternatives and similar repositories for jbrowse-jupyter:
Users that are interested in jbrowse-jupyter are comparing it to the libraries listed below
- interactive plots for differential expression analysis☆32Updated 2 weeks ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆34Updated 2 weeks ago
- a minimal, scriptable genome browser for python☆49Updated 2 months ago
- ☆21Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆24Updated last week
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆23Updated last month
- ☆15Updated last year
- BED QC tool (in the making)☆16Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 4 years ago
- ☆19Updated 3 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Annotating principal splice isoforms☆14Updated 5 months ago
- Personal diploid genome creation and coordinate conversion☆24Updated 3 weeks ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆42Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆21Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Processing and plotting tools for genomics data☆20Updated last week
- Fast sequencing data quality metrics☆25Updated this week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- ☆34Updated 6 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago