Alternatives and similar repositories for jbrowse-jupyter:

Users that are interested in jbrowse-jupyter are comparing it to the libraries listed below

• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆31Updated 8 months ago
• InscriptaLabs / BioCantor
  ☆21Updated last year
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆49Updated 2 months ago
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆23Updated 3 weeks ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆20Updated last week
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 2 years ago
• pachterlab / qcbc
  ☆19Updated 2 months ago
• ryangreenj / bioinformatics_tool_recommendation
  ☆19Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆33Updated 2 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆29Updated this week
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 4 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 2 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆20Updated 3 weeks ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆24Updated last month
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆51Updated 8 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆31Updated last week
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 3 years ago
• jordanlab / tagore
  The script presents a simple way to visualize features on human chromosome ideograms
  ☆40Updated 2 years ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆15Updated last year
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 6 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆22Updated 9 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆60Updated this week
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 4 months ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 6 months ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 9 years ago