gpp-rnd / rs3Links
Package to Score Sequences using Rule Set 3
β13Updated last week
Alternatives and similar repositories for rs3
Users that are interested in rs3 are comparing it to the libraries listed below
Sorting:
- Grouping of Lymphocyte Interactions by Paratope Hotspotsβ97Updated 4 years ago
- π Tools and databases for analyzing HLA and VDJ genes.β233Updated last month
- kallisto | bustools workflow for pre-processing single-cell RNA-seq dataβ118Updated 3 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.β81Updated last year
- code to run sei and obtain sei and sequence class predictionsβ109Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genβ¦β32Updated 4 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)β189Updated 2 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.β81Updated last year
- β38Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)β86Updated 4 years ago
- Core code for the DeepHF prediction toolβ39Updated 6 years ago
- β67Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seqβ147Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' dataβ122Updated this week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)β239Updated 4 months ago
- FlashFry: The rapid CRISPR target site characterization toolβ77Updated last year
- Public repository for ShapeMapper 2 releasesβ40Updated 11 months ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing dataβ141Updated last year
- β54Updated last month
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed inβ¦β122Updated last month
- What you need to process the Quarterly DepMap-Omics releases from Terraβ125Updated 2 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling dataβ18Updated 4 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq dataβ31Updated 4 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.β112Updated last year
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.β200Updated 4 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequencesβ62Updated 2 weeks ago
- R package to access DoRothEA's regulonsβ153Updated last year
- deep learning-inspired explainable sequence model for transcription initiationβ99Updated 8 months ago
- A continually expanding collection of cancer genomics notes and dataβ109Updated last month
- Notes on ChIP-seq and other-seq-related toolsβ26Updated 4 months ago