gpp-rnd / rs3
Package to Score Sequences using Rule Set 3
☆11Updated last year
Alternatives and similar repositories for rs3:
Users that are interested in rs3 are comparing it to the libraries listed below
- CRISPR Cas9 ontarget prediction software☆26Updated last month
- Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!☆23Updated 2 years ago
- Public repository for ShapeMapper 2 releases☆34Updated 3 months ago
- Core code for the DeepHF prediction tool☆36Updated 5 years ago
- coding exercise using TCGA immune infiltration data☆44Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated this week
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆82Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last month
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- ☆65Updated last month
- DRUGZ software☆23Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆22Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- Fast and flexible ORF finder☆69Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 11 months ago
- ☆27Updated 2 months ago
- HLA-II ligand predictor.☆43Updated last year
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆52Updated 5 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆60Updated last year
- predicting peptide and TCR interaction☆20Updated 4 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆17Updated 2 months ago
- iCount, protein-RNA interaction analytics☆23Updated 3 years ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆45Updated last year